This is the complete list of members for
ReferenceGenome, including all inherited members.
| cover(dnapos_t pos, char quality, int limit) | ReferenceGenome | |
| cover(dnapos_t pos, unsigned int length, const std::string &quality, int limit) | ReferenceGenome | |
| d_aCount | ReferenceGenome | |
| d_cCount | ReferenceGenome | |
| d_correctMappings | ReferenceGenome | |
| d_gcMappings | ReferenceGenome | |
| d_gCount | ReferenceGenome | |
| d_insertCounts | ReferenceGenome | |
| d_kmerMappings | ReferenceGenome | |
| d_locimap | ReferenceGenome | |
| d_mapping | ReferenceGenome | |
| d_name | ReferenceGenome | |
| d_taMappings | ReferenceGenome | |
| d_tCount | ReferenceGenome | |
| d_unmRegions | ReferenceGenome | |
| d_wrongMappings | ReferenceGenome | |
| getAllReadPosBoth(FastQRead *fq) | ReferenceGenome | |
| getGCHisto() | ReferenceGenome | |
| getMatchingFastQs(dnapos_t pos, StereoFASTQReader &fastq) | ReferenceGenome | |
| getMatchingFastQs(dnapos_t start, dnapos_t stop, StereoFASTQReader &fastq) | ReferenceGenome | |
| getMatchingHashes(const vector< uint32_t > &hashes) | ReferenceGenome | |
| getReadPosBoth(FastQRead *fq, int qlimit) | ReferenceGenome | |
| getReadPositions(const std::string &nucleotides) | ReferenceGenome | |
| index(unsigned int length) | ReferenceGenome | |
| locimap_t typedef | ReferenceGenome | |
| mapFastQ(dnapos_t pos, const FastQRead &fqfrag, int indel=0) | ReferenceGenome | |
| printCoverage(FILE *jsfp, const std::string &fname) | ReferenceGenome | |
| ReferenceGenome(const string &fname) | ReferenceGenome | |
| size() const | ReferenceGenome | [inline] |
| snippet(dnapos_t start, dnapos_t stop) const | ReferenceGenome | |
1.7.6.1
