FASTQReader Class Reference

Reads a single FASTQ file, and can seek in it. Does adapation of quality scores (Sanger by default) and and can also snip off first n or last n bases. More...

#include <fastq.hh>

List of all members.

Public Member Functions
	FASTQReader (const std::string &str, unsigned int qoffset, unsigned int snipLeft=0, unsigned int snipRight=0)
void	seek (uint64_t pos)
unsigned int	getRead (FastQRead *fq)
	Get a FastQRead, return number of bytes read.

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Detailed Description

Reads a single FASTQ file, and can seek in it. Does adapation of quality scores (Sanger by default) and and can also snip off first n or last n bases.

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Constructor & Destructor Documentation

FASTQReader::FASTQReader	(	const std::string &	str,
		unsigned int	qoffset,
		unsigned int	snipLeft = 0,
		unsigned int	snipRight = 0
	)

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Member Function Documentation

unsigned int FASTQReader::getRead

(

FastQRead *

fq

)

Get a FastQRead, return number of bytes read.

void FASTQReader::seek

(

uint64_t

pos

)

[inline]

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The documentation for this class was generated from the following files:

• fastq.hh
• fastq.cc