SAMWriter Class Reference

Write SAM files, with support for paired-end read mappings. More...

#include <saminfra.hh>

List of all members.

Public Member Functions
	SAMWriter (const std::string &fname, const std::string &genome, dnapos_t len)
	~SAMWriter ()
void	write (dnapos_t pos, const FastQRead &fqfrag, int indel=0, int flags=0, const std::string &rnext="*", dnapos_t pnext=0, int32_t tlen=0)

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Detailed Description

Write SAM files, with support for paired-end read mappings.

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Constructor & Destructor Documentation

SAMWriter::SAMWriter	(	const std::string &	fname,
		const std::string &	genome,
		dnapos_t	len
	)

SAMWriter::~SAMWriter

(

)

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Member Function Documentation

void SAMWriter::write	(	dnapos_t	pos,
		const FastQRead &	fqfrag,
		int	indel = 0,
		int	flags = 0,
		const std::string &	rnext = "*",
		dnapos_t	pnext = 0,
		int32_t	tlen = 0
	)

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The documentation for this class was generated from the following files:

• saminfra.hh
• saminfra.cc