Antonie
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Write SAM files, with support for paired-end read mappings. More...
#include <saminfra.hh>
Public Member Functions | |
SAMWriter (const std::string &fname, const std::string &genome, dnapos_t len) | |
~SAMWriter () | |
void | write (dnapos_t pos, const FastQRead &fqfrag, int indel=0, int flags=0, const std::string &rnext="*", dnapos_t pnext=0, int32_t tlen=0) |
Write SAM files, with support for paired-end read mappings.
SAMWriter::SAMWriter | ( | const std::string & | fname, |
const std::string & | genome, | ||
dnapos_t | len | ||
) |
void SAMWriter::write | ( | dnapos_t | pos, |
const FastQRead & | fqfrag, | ||
int | indel = 0 , |
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int | flags = 0 , |
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const std::string & | rnext = "*" , |
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dnapos_t | pnext = 0 , |
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int32_t | tlen = 0 |
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) |