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Public Member Functions
SAMWriter Class Reference

Write SAM files, with support for paired-end read mappings. More...

#include <saminfra.hh>

List of all members.

Public Member Functions

 SAMWriter (const std::string &fname, const std::string &genome, dnapos_t len)
 ~SAMWriter ()
void write (dnapos_t pos, const FastQRead &fqfrag, int indel=0, int flags=0, const std::string &rnext="*", dnapos_t pnext=0, int32_t tlen=0)

Detailed Description

Write SAM files, with support for paired-end read mappings.


Constructor & Destructor Documentation

SAMWriter::SAMWriter ( const std::string &  fname,
const std::string &  genome,
dnapos_t  len 
)

Member Function Documentation

void SAMWriter::write ( dnapos_t  pos,
const FastQRead fqfrag,
int  indel = 0,
int  flags = 0,
const std::string &  rnext = "*",
dnapos_t  pnext = 0,
int32_t  tlen = 0 
)

The documentation for this class was generated from the following files:
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