Antonie
geneannotated.hh
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00001 #pragma once
00002 #include <string>
00003 #include <vector>
00004 
00006 struct GeneAnnotation
00007 {
00008   std::string tag;
00009   std::string type;
00010   std::string name;
00011   bool strand;
00012   uint64_t startPos;
00013   uint64_t stopPos;
00014 };
00015 
00016 inline bool operator<(const GeneAnnotation&A, const GeneAnnotation& B)
00017 {
00018   return A.startPos < B.startPos;
00019 }
00020 
00022 class GeneAnnotationReader
00023 {
00024 public:
00025   GeneAnnotationReader(const std::string& fname); 
00026   std::vector<GeneAnnotation> lookup(uint64_t pos); 
00027   uint64_t size() const { return d_gas.size(); } 
00028 private:
00029   typedef std::vector<GeneAnnotation> gas_t;
00030   gas_t d_gas;
00031 };
00032 
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