misc.hh File Reference

#include <stdio.h>
#include <string>
#include <stdint.h>

Go to the source code of this file.

Classes
class	VarMeanEstimator
	Rapid estimator of variance and mean of a series of doubles. More...
Functions
void	chomp (char *line)
char *	sfgets (char *p, int num, FILE *fp)
void	reverseNucleotides (std::string *nucleotides)
uint64_t	filesize (const char *name)
bool	stringfgets (FILE *fp, std::string *line)
	read a line of text from a FILE* to a std::string, returns false on 'no data'
double	mean (const VarMeanEstimator &vme)
	extract 'mean' from a VarMeanEstimator
double	variance (const VarMeanEstimator &vme)
	extract 'variance' from a VarMeanEstimator

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Function Documentation

void chomp

(

char *

line

)

uint64_t filesize

(

const char *

name

)

double mean

(

const VarMeanEstimator &

vme

)

[inline]

extract 'mean' from a VarMeanEstimator

void reverseNucleotides

(

std::string *

nucleotides

)

char* sfgets	(	char *	p,
		int	num,
		FILE *	fp
	)

bool stringfgets	(	FILE *	fp,
		std::string *	line
	)

read a line of text from a FILE* to a std::string, returns false on 'no data'

double variance

(

const VarMeanEstimator &

vme

)

[inline]

extract 'variance' from a VarMeanEstimator