Reads FASTQs from two (synchronised) files at a time. Does magic with 64 bits offsets to encode which of the two FASTQReader to read from. More...

#include <fastq.hh>

Public Member Functions
	StereoFASTQReader (const std::string &name1, const std::string &name2, unsigned int qoffset, unsigned int snipLeft=0, unsigned int snipRight=0)
void	seek (uint64_t pos)
unsigned int	getRead (uint64_t pos, FastQRead *fq2)
unsigned int	getReadPair (FastQRead fq1, FastQRead fq2)

Detailed Description

Reads FASTQs from two (synchronised) files at a time. Does magic with 64 bits offsets to encode which of the two FASTQReader to read from.

Constructor & Destructor Documentation

StereoFASTQReader::StereoFASTQReader	(	const std::string &	name1,
		const std::string &	name2,
		unsigned int	qoffset,
		unsigned int	snipLeft = `0`,
		unsigned int	snipRight = `0`
	)		`[inline]`

unsigned int StereoFASTQReader::getRead	(	uint64_t	pos,
		FastQRead *	fq2
	)

unsigned int StereoFASTQReader::getReadPair	(	FastQRead *	fq1,
		FastQRead *	fq2
	)

void StereoFASTQReader::seek ( uint64_t pos )

The documentation for this class was generated from the following files: