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fastq.hh File Reference
#include <string>
#include <stdio.h>
#include <stdint.h>
#include <stdexcept>

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Classes

struct  FastQRead
 Represents a FastQRead. Can be reversed or not. More...
class  FASTQReader
 Reads a single FASTQ file, and can seek in it. Does adapation of quality scores (Sanger by default) and and can also snip off first n or last n bases. More...
class  StereoFASTQReader
 Reads FASTQs from two (synchronised) files at a time. Does magic with 64 bits offsets to encode which of the two FASTQReader to read from. More...
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