Antonie
Main Page
Classes
Files
Class List
Class Index
Class Members
All
Functions
Variables
Typedefs
Related Functions
c
d
e
f
g
i
l
m
o
p
q
r
s
t
v
w
~
- c -
clear() :
DuplicateCounter
Clusterer() :
Clusterer< T >
cover() :
ReferenceGenome
- d -
DuplicateCounter() :
DuplicateCounter
- e -
exceedsQuality() :
FastQRead
- f -
FastQRead() :
FastQRead
FASTQReader() :
FASTQReader
feed() :
Clusterer< T >
feedString() :
DuplicateCounter
- g -
GeneAnnotationReader() :
GeneAnnotationReader
GenomeLocusMapping() :
GenomeLocusMapping
getAllReadPosBoth() :
ReferenceGenome
getBegin() :
Clusterer< T >::cluster
getCounts() :
DuplicateCounter
getEnd() :
Clusterer< T >::cluster
getGCHisto() :
ReferenceGenome
getMatchingFastQs() :
ReferenceGenome
getMatchingHashes() :
ReferenceGenome
getMiddle() :
Clusterer< T >::cluster
getRead() :
StereoFASTQReader
,
FASTQReader
getReadPair() :
StereoFASTQReader
getReadPosBoth() :
ReferenceGenome
getReadPositions() :
ReferenceGenome
getSangerQualityString() :
FastQRead
- i -
index() :
ReferenceGenome
- l -
lookup() :
GeneAnnotationReader
- m -
mapFastQ() :
ReferenceGenome
- o -
operator()() :
VarMeanEstimator
operator<() :
ReferenceGenome::LociStats::Difference
- p -
printCoverage() :
ReferenceGenome
printTop() :
Search16S
- q -
qtally() :
qtally
- r -
ReferenceGenome() :
ReferenceGenome
reverse() :
FastQRead
- s -
SAMWriter() :
SAMWriter
score() :
Search16S
Search16S() :
Search16S
seek() :
FASTQReader
,
StereoFASTQReader
size() :
ReferenceGenome
,
GeneAnnotationReader
snippet() :
ReferenceGenome
StereoFASTQReader() :
StereoFASTQReader
- t -
topScores() :
Search16S
- v -
VarMeanEstimator() :
VarMeanEstimator
- w -
write() :
SAMWriter
- ~ -
~SAMWriter() :
SAMWriter
All
Classes
Files
Functions
Variables
Typedefs
Friends
Defines
Generated on Mon Nov 25 2013 10:05:59 for Antonie by
1.7.6.1